Both stratagems say you can add an extra relic, but neither mention that you can't use both.
It would make most sense to me if you could only use a stratagem like Enigmas if your Warlord is a Harlequin, or Prizes from the Dark City if you Warlord is Drukhari. However, the rule does not mention that.
So, can I use a Drukhari Warlord, and use Enigmas of the Black Library to give my Harlequin detachment a relic as well? Does any other armies stratagem say anything about that?